| Protein ZmZIM16 | |
|---|---|
|
ZmZIM16 is a protein in the ZIM family.
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| Information | |
| TF Name: | ZmZIM16 |
| Species: | Maize |
| TF Family: | ZIM |
| Gene Name(Synonym): | ZIM16 |
| Uniprot ID: | B6TF40 |
Protein ZmZIM16
ZmZIM16 is a protein in the ZIM family.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF06200 | PF09425 | |
| Zm00001eb006000_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d027901 | DAPseq |  |
sequence | fimo | position |
| Zm00001d027901 | DAPseq |  |
sequence | fimo | position |
| Zm00001d027901 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d027901 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmZIM16 is the regulator
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Interactions where ZmZIM16 is the target
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Zm00001eb006000_T001 from maize genome v5
Amino Acid Sequence
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MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF06200 |
|
| PF09425 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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ATCCATTCCCACAGCACCAAGCAAG...
ATCCATTCCCACAGCACCAAGCAAGAGCAAAGAGCAACACAAGCCAAGGCAGCAAACGACCCGCGGCGACGCAAGAAGAGAAGCCAGCAGTCGTCTGGATCCATCGATTGACATGGCCATGGCGGCGGCAGCGGAGGGCAAGAGCCGGAGGTTCGCGCTGGCCTGCGGGGTGCTGAGCCAGTACGTGAAGGCCGAGCAGCAGATGGCGGCCGCCGGGGCCCCTGCCCCGCGCGCCCCGGCCACGACGCTGAGCCTCATGCCCGGCGCGGACGTCGGCGCCGAGCAGGAGCAGGCCGCCGCGAGGGGGCAGGAGACGGCCGGGTCCGCCTCCACGGCGGCGCCGCTCACCATCTTCTACGGCGGCAGGGTGGTCGTGTTCGACGACTTCCCGGCGGAGAAGGCGGCCGAGGTCATGCGCCTCGCAGCTGGCGCCGAGCGCCCGGCGGCCCCGGCCCCGGCGCCGGCGCCGCGCGACGACCTGCCCATCGCCCGGAAGGCGTCGCTGCAGCGGTTCCTGGCCAAGCGCAAGGACCGCCTCGTGGAGCGCGCCCCCTACGCCCGCCCGTCCCCATCCGAGGAGGCGGAGAAGGCGAAGCCGGCCTCCTCGTGGCTCGGGCTCGGCGGCACGGACGCCGAGCGCCTCAACATCGCGCTGTGATTTGGATCTCGCTTGCTACCCACCTGGATCGACCGGGGGCGATTTGATTGGCTGGGTTCCTGGCTTCCTTTGGGTCTGCTGGATTGGGGTTGGTGTGGAGATCGGAGACGGAGGATTGTAGAAACGTATTCTTGTTTTTTTTCTCTCTCCCTTACGAGAGAGTTTGGCTGTTAATTGATTCGATAATAGAAAGATGGAGGATGTACAATTCGTGTCTTTCCTTCGTTCTGAATGTCTATTTTCCCTGCAAAAATCGTGGCTGAATTCATACAAA
GRMZM2G445634_T01 from maize genome v3
Amino Acid Sequence
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MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
Nucleotide Sequence
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CCCCGCCCCCATCCCGCTATAAAAG...
CCCCGCCCCCATCCCGCTATAAAAGACAAGAGCAACACAAGCCAAGGCAGCAAACGACCCGCGGCGACGCAAGAAGAGAAGCCAGCAGTCGTCTGGATCCATCGATTGACATGGCCATGGCGGCGGCAGCGGAGGGCAAGAGCCGGAGGTTCGCGCTGGCCTGCGGGGTGCTGAGCCAGTACGTGAAGGCCGAGCAGCAGATGGCGGCCGCCGGGGCCCCTGCCCCGCGCGCCCCGGCCACGACGCTGAGCCTCATGCCCGGCGCGGACGTCGGCGCCGAGCAGGAGCAGGCCGCCGCGAGGGGGCAGGAGACGGCCGGGTCCGCCTCCACGGCGGCGCCGCTCACCATCTTCTACGGCGGCAGGGTGGTCGTGTTCGACGACTTCCCGGCGGAGAAGGCGGCCGAGGTCATGCGCCTCGCAGCTGGCGCCGAGCGCCCGGCGGCCCCGGCCCCGGCGCCGGCGCCGCGCGACGACCTGCCCATCGCCCGGAAGGCGTCGCTGCAGCGGTTCCTGGCCAAGCGCAAGGACCGCCTCGTGGAGCGCGCCCCCTACGCCCGCCCGTCCCCATCCGAGGAGGCGGAGAAGGCGAAGCCGGCCTCCTCGTGGCTCGGGCTCGGCGGCACGGACGCCGAGCGCCTCAACATCGCGCTGTGATTTGGATCTCGCTTGCTACCCACCTGGATCGACCGGGGGCGATTTGATTGGCTGGGTTCCTGGCTTCCTTTGGGTCTGCTGGATTGGGGTTGGTGTGGAGATCGGAGACGGAGGATTGTAGAAACGTATTCTTGTTTTTTTTCTCTCTCCCTTACGAGAGAGTTTGGCTGTTAATTGATTCGATAATAGAAAGATGGAGGATGTACAATTCGTGTCT
Zm00001d027901_T001 from maize genome v4
Amino Acid Sequence
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MAMAAAAEGKSRRFALACGVLSQYVKAEQQMAAAGAPAPRAPATTLSLMPGADVGAEQEQAAARGQETAGSASTAAPLTI
FYGGRVVVFDDFPAEKAAEVMRLAAGAERPAAPAPAPAPRDDLPIARKASLQRFLAKRKDRLVERAPYARPSPSEEAEKA
KPASSWLGLGGTDAERLNIAL
Nucleotide Sequence
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ATGGCCATGGCGGCGGCAGCGGAGG...
ATGGCCATGGCGGCGGCAGCGGAGGGCAAGAGCCGGAGGTTCGCGCTGGCCTGCGGGGTGCTGAGCCAGTACGTGAAGGCCGAGCAGCAGATGGCGGCCGCCGGGGCCCCTGCCCCGCGCGCCCCGGCCACGACGCTGAGCCTCATGCCCGGCGCGGACGTCGGCGCCGAGCAGGAGCAGGCCGCCGCGAGGGGGCAGGAGACGGCCGGGTCCGCCTCCACGGCGGCGCCGCTCACCATCTTCTACGGCGGCAGGGTGGTCGTGTTCGACGACTTCCCGGCGGAGAAGGCGGCCGAGGTCATGCGCCTCGCAGCTGGCGCCGAGCGCCCGGCGGCCCCGGCCCCGGCGCCGGCGCCGCGCGACGACCTGCCCATCGCCCGGAAGGCGTCGCTGCAGCGGTTCCTGGCCAAGCGCAAGGACCGCCTCGTGGAGCGCGCCCCCTACGCCCGCCCGTCCCCATCCGAGGAGGCGGAGAAGGCGAAGCCGGCCTCCTCGTGGCTCGGGCTCGGCGGCACGGACGCCGAGCGCCTCAACATCGCGCTGTGA
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